Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_1356HD domain protein; Identified by match to protein family HMM PF01966. (267 aa)    
Predicted Functional Partners:
DVU_1355
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
DVU_1357
Conserved domain protein; Identified by similarity to OMNI:NTL01TT0547.
       0.773
DVU_1354
Hypothetical protein; Identified by Glimmer2; putative.
       0.697
DVU_0810
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.477
DVU_0772
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.468
dnaE
DNA polymerase III, alpha subunit; Identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02231; match to protein family HMM PF02811; match to protein family HMM TIGR00594.
       0.465
DVU_1352
6-pyruvoyl tetrahydrobiopterin synthase, putative; Identified by match to protein family HMM PF01242.
       0.453
DVU_0449
Sensor/response regulator; Involved in chemotaxis. Part of a chemotaxis signal transduction system that modulates chemotaxis in response to various stimuli. Catalyzes the demethylation of specific methylglutamate residues introduced into the chemoreceptors (methyl-accepting chemotaxis proteins or MCP) by CheR. Also mediates the irreversible deamidation of specific glutamine residues to glutamic acid. Belongs to the CheB family.
  
 
 0.446
DVU_2896
TPR domain protein; Identified by match to protein family HMM PF00515.
  
 
   0.438
DVU_3274
Hypothetical protein; Identified by Glimmer2; putative.
  
     0.437
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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