Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
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textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
DVU_1382HesB family selenoprotein; Selenoprotein; identified by match to protein family HMM PF01521; Belongs to the HesB/IscA family. (107 aa)    
Predicted Functional Partners:
DVU_0665
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.
 
 0.990
DVU_0664
Cysteine desulfurase; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
 
 
 0.782
DVU_2553
Identified by match to protein family HMM PF01106.
  
 
 0.714
DVU_3273
Conserved hypothetical protein; Identified by similarity to GP:944973.
  
    0.697
DVU_1381
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.630
DVU_0298
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 
 0.617
DVU_1380
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.614
DVU_1022
SUF system FeS assembly ATPase SufC, putative; Identified by similarity to OMNI:NTL02MA4294; match to protein family HMM PF00005; match to protein family HMM TIGR01978.
  
 
 0.572
DVU_3274
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.565
DVU_1383
Hypothetical protein; Identified by Glimmer2; putative.
       0.547
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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