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lpdA protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"lpdA" - 2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase in Desulfovibrio vulgaris Hildenborough
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second shell of interactors
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proteins of unknown 3D structure
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Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
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lpdA2-oxoglutarate dehydrogenase, E3 component, lipoamide dehydrogenase; Identified by similarity to SP-O34324; match to protein family HMM PF00070; match to protein family HMM PF02852; Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family (456 aa)    
Predicted Functional Partners:
gcvPB
Glycine dehydrogenase (aminomethyl-transferring); Identified by similarity to SP-P54377; Belongs to the GcvP family (481 aa)
 
 
  0.993
gcvPA
Probable glycine dehydrogenase (decarboxylating) subunit 1; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. N-terminal subunit subfamily (443 aa)
 
   
  0.993
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein (127 aa)
 
 
  0.986
gcvT
Glycine cleavage system T protein; Identified by match to protein family HMM PF01571; match to protein family HMM TIGR00528 (362 aa)
 
 
  0.952
glyA
Serine hydroxymethyltransferase; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism; Belongs to the SHMT family (412 aa)
 
 
  0.933
sucCD
Succinate--CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit (709 aa)
 
 
  0.916
DVU_1529
Cytokinin riboside 5’-monophosphate phosphoribohydrolase; Identified by match to protein family HMM PF03641; match to protein family HMM TIGR00730; Belongs to the LOG family (218 aa)
   
 
    0.909
poR
Pyruvate synthase; Identified by similarity to GP-1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855 (1215 aa)
       
  0.908
DVU_3121
Aminotransferase, class V; Identified by match to protein family HMM PF00266 (376 aa)
     
 
    0.903
DVU_1260
Outer membrane protein P1, putative; Identified by similarity to GP-9716643; match to protein family HMM PF03349 (427 aa)
         
  0.900
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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