STRINGSTRING
DVU_1460 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1460" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1460Uncharacterized protein; Identified by Glimmer2; putative (111 aa)    
Predicted Functional Partners:
DVU_1462
Cytochrome c assembly protein, putative; Identified by match to protein family HMM PF01578 (243 aa)
              0.858
hemA
Glutamyl-tRNA reductase; Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA); Belongs to the glutamyl-tRNA reductase family (440 aa)
              0.858
tilS
tRNA(Ile)-lysidine synthase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine; Belongs to the tRNA(Ile)-lysidine synthase family (390 aa)
              0.804
DVU_3273
Uncharacterized protein; Identified by similarity to GP-944973 (130 aa)
   
          0.781
dsvD
Protein DsvD; May play an essential role in dissimilatory sulfite reduction (78 aa)
   
          0.778
DVU_1382
HesB family selenoprotein; Selenoprotein; identified by match to protein family HMM PF01521; Belongs to the HesB/IscA family (107 aa)
   
          0.776
DVU_3274
Uncharacterized protein; Identified by Glimmer2; putative (222 aa)
   
          0.775
DVU_0772
Uncharacterized protein; Identified by Glimmer2; putative (115 aa)
   
          0.770
DVU_0651
annotation not available (362 aa)
   
          0.770
DVU_2427
Uncharacterized protein; Identified by Glimmer2; putative (213 aa)
   
          0.769
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (23%) [HD]