Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_1486Tail fiber protein, truncation. (770 aa)    
Predicted Functional Partners:
DVU_2157
Tail tape meausure protein, putative.
 
   0.936
DVU_1490
Tail tape measure protein, putative.
 
 
 0.934
DVU_1488
Minor tail protein, putative.
  
   0.858
DVU_1483
Tail fiber assembly protein, putative.
  
  
 0.809
DVU_1484
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.791
DVU_1485
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.790
DVU_1481
Nuclease domain protein; Identified by match to protein family HMM PF00565.
       0.689
DVU_1482
Hypothetical protein; Identified by Glimmer2; putative.
       0.689
DVU_2154
Tail assembly protein, putative; Identified by match to protein family HMM PF00877.
 
    0.597
DVU_1333
Hypothetical protein; Identified by Glimmer2; putative.
      
 0.589
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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