Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
DVU_1490Tail tape measure protein, putative. (932 aa)    
Predicted Functional Partners:
DVU_1488
Minor tail protein, putative.
  
 
 0.986
DVU_1486
Tail fiber protein, truncation.
 
 
 0.934
DVU_2153
Tail fiber protein, putative.
 
 
 0.921
DVU_1487
Conserved domain protein.
  
 
 0.876
DVU_0199
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
  
 
 0.858
DVU_2169
Conserved hypothetical protein; Identified by similarity to GP:311850.
  
 
 0.858
DVU_2870
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS0859.
  
 
 0.858
DVU_2155
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.838
DVU_1261
Conserved domain protein; Identified by similarity to SP:P45754.
  
    0.805
DVU_2876
Terminase, large subunit, putative; Identified by similarity to GP:13361094.
 
    0.804
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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