Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1494Hypothetical protein; Identified by Glimmer2; putative. (387 aa)    
Predicted Functional Partners:
DVU_1498
Conserved hypothetical protein; Identified by similarity to GP:17484030.
  
    0.871
DVU_1493
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.795
DVU_1495
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.785
DVU_1499
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.711
DVU_1497
Head-tail adaptor, putative; Identified by match to protein family HMM TIGR01563.
  
    0.705
DVU_1496
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.664
DVU_1492
Hypothetical protein; Identified by Glimmer2; putative.
       0.658
DVU_1500
Major capsid protein, HK97 family; Identified by match to protein family HMM TIGR01554.
  
    0.562
DVU_1501
Identified by match to protein family HMM PF00574.
  
    0.439
DVU_1502
Portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
  
    0.428
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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