Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1496Hypothetical protein; Identified by Glimmer2; putative. (165 aa)    
Predicted Functional Partners:
DVU_1495
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.941
DVU_1493
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.936
DVU_1127
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.846
DVU_1487
Conserved domain protein.
   
    0.846
DVU_2153
Tail fiber protein, putative.
   
    0.846
DVU_1497
Head-tail adaptor, putative; Identified by match to protein family HMM TIGR01563.
  
    0.813
DVU_2194
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.798
DVU_1498
Conserved hypothetical protein; Identified by similarity to GP:17484030.
  
    0.794
DVU_1499
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.793
DVU_1156
Sigma-54 dependent transcriptional regulator, putative/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM TIGR01199.
   
    0.788
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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