STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1497Head-tail adaptor, putative; Identified by match to protein family HMM TIGR01563. (108 aa)    
Predicted Functional Partners:
DVU_1498
Conserved hypothetical protein; Identified by similarity to GP:17484030.
 
 
 0.990
DVU_1500
Major capsid protein, HK97 family; Identified by match to protein family HMM TIGR01554.
 
 
 0.984
DVU_1502
Portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537.
 
 
 0.962
DVU_1503
Terminase, large subunit; Identified by match to protein family HMM PF03354.
 
    0.875
DVU_1504
Terminase, small subunit; Identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558.
 
    0.874
DVU_1505
Holin, putative; Identified by match to protein family HMM PF01844.
 
    0.867
DVU_1499
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.816
DVU_1496
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.814
DVU_1501
Identified by match to protein family HMM PF00574.
 
    0.779
DVU_2878
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
 
    0.734
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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