Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1502Portal protein, HK97 family; Identified by match to protein family HMM PF04860; match to protein family HMM TIGR01537. (419 aa)    
Predicted Functional Partners:
DVU_1504
Terminase, small subunit; Identified by match to protein family HMM PF05119; match to protein family HMM TIGR01558.
 
  
 0.979
DVU_1501
Identified by match to protein family HMM PF00574.
 
  
 0.976
DVU_1498
Conserved hypothetical protein; Identified by similarity to GP:17484030.
 
 
 0.969
DVU_1500
Major capsid protein, HK97 family; Identified by match to protein family HMM TIGR01554.
 
 
 0.968
DVU_1503
Terminase, large subunit; Identified by match to protein family HMM PF03354.
 
  
 0.963
DVU_1497
Head-tail adaptor, putative; Identified by match to protein family HMM TIGR01563.
 
 
 0.955
DVU_1505
Holin, putative; Identified by match to protein family HMM PF01844.
 
  
 0.949
DVU_0192
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.853
DVU_2878
Adenine specific DNA methyltransferase, putative; Identified by match to protein family HMM PF01555; match to protein family HMM PF02195; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.853
DVU_3282
Identified by match to protein family HMM PF03747.
   
   0.779
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (14%) [HD]