STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1552Conserved hypothetical protein; Identified by similarity to OMNI:NTL02SC5917; match to protein family HMM PF02625. (376 aa)    
Predicted Functional Partners:
mop
Aldehyde oxidoreductase; Identified by similarity to SP:Q46509; match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738.
 
  
 0.976
DVU_1551
HD domain protein; Identified by match to protein family HMM PF01966.
  
 0.957
DVU_1558
Cysteine-rich domain/iron-sulfur cluster-binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754.
 
    0.936
DVU_1557
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.931
DVU_1554
Radical SAM domain protein; Identified by match to protein family HMM PF04055.
 
    0.927
DVU_1555
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.926
DVU_1553
AMP-binding protein.
    0.895
DVU_1556
Conserved domain protein.
 
    0.891
DVU_1560
Molybdopterin biosynthesis protein, putative; Catalyzes the insertion of molybdate into adenylated molybdopterin with the concomitant release of AMP. Belongs to the MoeA family.
 
  
 0.760
DVU_0735
MOSC domain protein; Identified by match to protein family HMM PF03473.
  
 0.719
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.