STRINGSTRING
DVU_1556 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1556" - annotation not available in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1556annotation not available (297 aa)    
Predicted Functional Partners:
DVU_1555
Uncharacterized protein; Identified by Glimmer2; putative (150 aa)
 
          0.958
DVU_1557
Uncharacterized protein; Identified by Glimmer2; putative (71 aa)
 
          0.955
DVU_1558
Cysteine-rich domain/iron-sulfur cluster-binding domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF02754 (797 aa)
 
          0.941
DVU_1554
Radical SAM domain protein; Identified by match to protein family HMM PF04055 (543 aa)
 
          0.932
DVU_1553
annotation not available (449 aa)
 
          0.907
DVU_1552
Uncharacterized protein; Identified by similarity to OMNI-NTL02SC5917; match to protein family HMM PF02625 (376 aa)
 
          0.882
mop
Aldehyde oxidoreductase; Identified by similarity to SP-Q46509; match to protein family HMM PF00111; match to protein family HMM PF01315; match to protein family HMM PF01799; match to protein family HMM PF02738 (906 aa)
 
          0.859
DVU_1551
HD domain protein; Identified by match to protein family HMM PF01966 (468 aa)
 
          0.779
DVU_1550
Identified by match to protein family HMM PF00300 (218 aa)
 
          0.626
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit (208 aa)
     
      0.540
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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