node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
DVU_0156 | dnaN | DVU_0156 | DVU_0002 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | 0.840 |
DVU_0156 | radA | DVU_0156 | DVU_1590 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.685 |
DVU_0156 | recA | DVU_0156 | DVU_1090 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.857 |
DVU_0156 | thiL | DVU_0156 | DVU_0157 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | Thiamin-monophosphate kinase; Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1; Belongs to the thiamine-monophosphate kinase family. | 0.809 |
DVU_0156 | uvrC | DVU_0156 | DVU_0801 | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.817 |
DVU_1589 | hpt | DVU_1589 | DVU_1588 | Hypothetical protein; Identified by Glimmer2; putative. | Hypoxanthine phosphoribosyltransferase; Identified by similarity to SP:P37472; match to protein family HMM PF00156; match to protein family HMM TIGR01203; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | 0.723 |
DVU_1589 | radA | DVU_1589 | DVU_1590 | Hypothetical protein; Identified by Glimmer2; putative. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.778 |
DVU_1858 | dnaN | DVU_1858 | DVU_0002 | Cold shock domain protein; Identified by match to protein family HMM PF00313. | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | 0.632 |
DVU_1858 | radA | DVU_1858 | DVU_1590 | Cold shock domain protein; Identified by match to protein family HMM PF00313. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.729 |
DVU_2188 | radA | DVU_2188 | DVU_1590 | Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.653 |
DVU_2188 | recA | DVU_2188 | DVU_1090 | Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.485 |
DVU_2188 | rimI | DVU_2188 | DVU_1678 | Primase, putative; Identified by match to protein family HMM PF01751; match to protein family HMM PF03288; match to protein family HMM TIGR01613. | Ribosomal-protein-alanine acetyltransferase; Identified by match to protein family HMM PF00583; match to protein family HMM TIGR01575. | 0.594 |
dnaN | DVU_0156 | DVU_0002 | DVU_0156 | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | 0.840 |
dnaN | DVU_1858 | DVU_0002 | DVU_1858 | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | Cold shock domain protein; Identified by match to protein family HMM PF00313. | 0.632 |
dnaN | radA | DVU_0002 | DVU_1590 | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.796 |
dnaN | recA | DVU_0002 | DVU_1090 | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | recA protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.921 |
dnaN | uvrC | DVU_0002 | DVU_0801 | DNA polymerase III, beta subunit; Identified by match to protein family HMM PF00712; match to protein family HMM PF02768; match to protein family HMM TIGR00663. | Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.505 |
hpt | DVU_1589 | DVU_1588 | DVU_1589 | Hypoxanthine phosphoribosyltransferase; Identified by similarity to SP:P37472; match to protein family HMM PF00156; match to protein family HMM TIGR01203; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | Hypothetical protein; Identified by Glimmer2; putative. | 0.723 |
hpt | radA | DVU_1588 | DVU_1590 | Hypoxanthine phosphoribosyltransferase; Identified by similarity to SP:P37472; match to protein family HMM PF00156; match to protein family HMM TIGR01203; Belongs to the purine/pyrimidine phosphoribosyltransferase family. | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | 0.694 |
radA | DVU_0156 | DVU_1590 | DVU_0156 | DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function. | ATP-dependent DNA helicase, UvrD/REP family; Identified by match to protein family HMM PF00580. | 0.685 |