STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aatLeucyl/phenylalanyl-trna---protein transferase; Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl- tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine (234 aa)    
Predicted Functional Partners:
clpS
Atp-dependent clp protease adaptor protein clps; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation
 
   
 0.979
clpA
Atp-dependent clp protease, atp-binding subunit clpa; Belongs to the ClpA/ClpB family
 
 
 
 0.957
DVU_1600
Adenylate cyclase, class 2; Adenylate cyclase; Identified by match to protein family HMM PF01928
       0.703
crcB
Fluoride exporter; Important for reducing fluoride concentration in the cell, thus reducing its toxicity
       0.491
DVU_1598
Uncharacterized protein; Identified by similarity to SP:Q9FC38; match to protein family HMM PF02641
       0.415
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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