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yfiA protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"yfiA" - Ribosome hibernation promoting factor in Desulfovibrio vulgaris Hildenborough
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yfiARibosome hibernation promoting factor; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth (179 aa)    
Predicted Functional Partners:
DVU_1630
PTS system, IIA component; Identified by match to protein family HMM PF00359 (149 aa)
   
        0.934
DVU_1631
Nucleotide-binding protein DVU_1631; Displays ATPase and GTPase activities (303 aa)
   
   
  0.895
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released (476 aa)
   
   
  0.822
rpmH
50S ribosomal protein L34; Identified by match to protein family HMM PF00468; match to protein family HMM TIGR01030; Belongs to the bacterial ribosomal protein bL34 family (44 aa)
     
 
  0.816
rpmJ
50S ribosomal protein L36; Identified by match to protein family HMM PF00444; match to protein family HMM TIGR01022; Belongs to the bacterial ribosomal protein bL36 family (37 aa)
       
      0.816
DVU_1633
PTS system, IIB component; Identified by similarity to SP-P42909; match to protein family HMM PF03830 (153 aa)
              0.810
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (105 aa)
     
      0.805
rpmC
50S ribosomal protein L29; Identified by similarity to SP-P04457; match to protein family HMM PF00831; match to protein family HMM TIGR00012; Belongs to the universal ribosomal protein uL29 family (61 aa)
     
      0.804
rplP
50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs (137 aa)
     
 
  0.794
rpmD
50S ribosomal protein L30; Identified by match to protein family HMM PF00327; match to protein family HMM TIGR01308 (56 aa)
       
      0.789
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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