Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_1639Conserved domain protein. (331 aa)    
Predicted Functional Partners:
DVU_1640
Hypothetical protein; Identified by Glimmer2; putative.
       0.773
DVU_1641
Conserved hypothetical protein; Identified by similarity to SP:P51732.
       0.742
DVU_1642
Hypothetical protein; Identified by Glimmer2; putative.
       0.723
DVU_1638
Conserved domain protein.
  
    0.555
rlpA
Rare lipoprotein A, putative; Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides.
    
   0.516
DVU_1247
Hypothetical protein; Identified by Glimmer2; putative.
    
   0.516
DVU_1637
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.490
DVU_1114
Virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
  
    0.427
DVU_2708
Virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
  
    0.427
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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