STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1639Conserved domain protein. (331 aa)    
Predicted Functional Partners:
DVU_1640
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.894
DVU_1641
Conserved hypothetical protein; Identified by similarity to SP:P51732.
  
  
 0.880
DVU_1642
Hypothetical protein; Identified by Glimmer2; putative.
     
 0.871
DVU_1638
Conserved domain protein.
  
    0.543
DVU_1637
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.480
DVU_2708
Virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
  
    0.438
DVU_1114
Virion morphogenesis protein; Identified by match to protein family HMM PF05069; match to protein family HMM TIGR01635.
  
    0.433
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.