DVU_1671 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DVU_1671

ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664. (601 aa)

Predicted Functional Partners:

lpxK

0.920

DVU_1245

0.900

DVU_0747

0.890

DVU_1672

0.864

DVU_1673

0.837

DVU_1017

0.833

DVU_1368

0.824

dnaK

0.801

DVU_0126

0.743

DVU_0160

0.742

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0126	DVU_1671	DVU_0126	DVU_1671	ABC transporter, ATP-binding protein; Identified by similarity to SP:P37624; match to protein family HMM PF00005.	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.743
DVU_0160	DVU_1671	DVU_0160	DVU_1671	Carbohydrate isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily.	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.742
DVU_0160	DVU_1672	DVU_0160	DVU_1672	Carbohydrate isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01FN1845; match to protein family HMM PF04028.	0.461
DVU_0160	DVU_1673	DVU_0160	DVU_1673	Carbohydrate isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily.	Acyltransferase, putative.	0.742
DVU_0160	lpxK	DVU_0160	DVU_2468	Carbohydrate isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily.	Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).	0.911
DVU_0747	DVU_1671	DVU_0747	DVU_1671	ABC transporter, ATP-binding protein; Identified by similarity to OMNI:CC1598; match to protein family HMM PF00005.	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.890
DVU_1017	DVU_1671	DVU_1017	DVU_1671	ABC transporter, ATP-binding protein/permease protein; Identified by similarity to OMNI:VCA1084; match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.833
DVU_1245	DVU_1671	DVU_1245	DVU_1671	ABC transporter, ATP-binding protein; Identified by similarity to SP:P45393; match to protein family HMM PF00005.	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.900
DVU_1368	DVU_1671	DVU_1368	DVU_1671	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	0.824
DVU_1368	dnaK	DVU_1368	DVU_0811	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.606
DVU_1671	DVU_0126	DVU_1671	DVU_0126	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by similarity to SP:P37624; match to protein family HMM PF00005.	0.743
DVU_1671	DVU_0160	DVU_1671	DVU_0160	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Carbohydrate isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily.	0.742
DVU_1671	DVU_0747	DVU_1671	DVU_0747	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by similarity to OMNI:CC1598; match to protein family HMM PF00005.	0.890
DVU_1671	DVU_1017	DVU_1671	DVU_1017	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein/permease protein; Identified by similarity to OMNI:VCA1084; match to protein family HMM PF00005; match to protein family HMM PF00664.	0.833
DVU_1671	DVU_1245	DVU_1671	DVU_1245	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	ABC transporter, ATP-binding protein; Identified by similarity to SP:P45393; match to protein family HMM PF00005.	0.900
DVU_1671	DVU_1368	DVU_1671	DVU_1368	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Rhodanese-like domain protein; Identified by match to protein family HMM PF00581.	0.824
DVU_1671	DVU_1672	DVU_1671	DVU_1672	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01FN1845; match to protein family HMM PF04028.	0.864
DVU_1671	DVU_1673	DVU_1671	DVU_1673	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Acyltransferase, putative.	0.837
DVU_1671	dnaK	DVU_1671	DVU_0811	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	dnaK protein; Acts as a chaperone; Belongs to the heat shock protein 70 family.	0.801
DVU_1671	lpxK	DVU_1671	DVU_2468	ABC transporter, ATP-binding protein/permease protein; Identified by match to protein family HMM PF00005; match to protein family HMM PF00664.	Tetraacyldisaccharide 4'-kinase; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).	0.920

page 1 of 2

Server load: medium (48%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Co-occurrence

Textmining

Co-expression

© STRING Consortium 2026

Credits

Access

Info

About