Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1690Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440. (189 aa)    
Predicted Functional Partners:
DVU_1689
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.470
pth
peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family.
  
    0.462
DVU_1291
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.457
DVU_1382
HesB family selenoprotein; Selenoprotein; identified by match to protein family HMM PF01521; Belongs to the HesB/IscA family.
  
    0.457
DVU_0179
Molybdenum-pterin binding domain protein/site-specific recombinase, phage integrase family; Identified by similarity to SP:Q08385; similar to OMNI:CC3006; match to protein family HMM PF00589; match to protein family HMM PF03459; match to protein family HMM TIGR00638.
  
   
 0.454
DVU_0258
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
   
 0.445
DVU_1691
Hypothetical protein; Identified by Glimmer2; putative.
       0.437
DVU_1081
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
 
     0.417
DVU_2149
Conserved hypothetical protein; Identified by similarity to GP:21666416; match to protein family HMM PF05670.
  
     0.415
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (38%) [HD]