Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_1697Hypothetical protein; Identified by Glimmer2; putative. (192 aa)    
Predicted Functional Partners:
DVU_1695
Tail fiber assembly protein, putative.
  
    0.795
DVU_1696
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.793
DVU_1694
C4-type zinc finger protein, DksA/TraR family; Identified by match to protein family HMM PF01258.
  
  
 0.762
fliF
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
   
 
 0.581
flgC
Flagellar basal-body rod protein FlgC; Identified by similarity to SP:P75935; match to protein family HMM PF00460; match to protein family HMM TIGR01395; Belongs to the flagella basal body rod proteins family.
   
 
 0.566
DVU_1537
Lipoprotein, putative; Identified by match to protein family HMM PF03938.
  
 
 0.521
DVU_2370
Outer membrane protein OmpH, putative; Identified by similarity to SP:P31519; match to protein family HMM PF03938.
  
 
 0.521
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
   
   0.518
DVU_0307
Flagella basal body rod domain protein; Identified by match to protein family HMM PF00460.
   
 
 0.509
flgE
Flagellar hook protein FlgE; Identified by similarity to SP:O07884; match to protein family HMM PF00460.
   
 
 0.509
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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