STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1697Hypothetical protein; Identified by Glimmer2; putative. (192 aa)    
Predicted Functional Partners:
DVU_1695
Tail fiber assembly protein, putative.
  
    0.792
DVU_1696
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.784
DVU_1694
C4-type zinc finger protein, DksA/TraR family; Identified by match to protein family HMM PF01258.
  
  
 0.760
DVU_0266
Hypothetical protein; Identified by Glimmer2; putative.
  
 
 0.634
tolB
tolB protein, putative; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.634
poR
Pyruvate-ferredoxin oxidoreductase; Identified by similarity to GP:1770208; match to protein family HMM PF00037; match to protein family HMM PF01558; match to protein family HMM PF01855.
   
   0.623
rpsF
Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
   0.591
DVU_2879
Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.
  
 
 0.587
DVU_0191
Conserved hypothetical protein; Identified by similarity to OMNI:CC3049.
  
 
 0.575
DVU_1537
Lipoprotein, putative; Identified by match to protein family HMM PF03938.
  
 
 0.562
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.