hsdM protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

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Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_1702	DVU_1703	DVU_1702	DVU_1703	Conserved hypothetical protein; Identified by similarity to GP:21114108; match to protein family HMM PF01863.	Type I restriction-modification enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.978
DVU_1702	DVU_1705	DVU_1702	DVU_1705	Conserved hypothetical protein; Identified by similarity to GP:21114108; match to protein family HMM PF01863.	Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.	0.885
DVU_1702	DVU_1708	DVU_1702	DVU_1708	Conserved hypothetical protein; Identified by similarity to GP:21114108; match to protein family HMM PF01863.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01XC0464.	0.423
DVU_1702	DVU_1710	DVU_1702	DVU_1710	Conserved hypothetical protein; Identified by similarity to GP:21114108; match to protein family HMM PF01863.	Conserved hypothetical protein; Identified by similarity to GP:21114103.	0.848
DVU_1702	hsdM	DVU_1702	DVU_1709	Conserved hypothetical protein; Identified by similarity to GP:21114108; match to protein family HMM PF01863.	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497.	0.856
DVU_1703	DVU_1702	DVU_1703	DVU_1702	Type I restriction-modification enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Conserved hypothetical protein; Identified by similarity to GP:21114108; match to protein family HMM PF01863.	0.978
DVU_1703	DVU_1705	DVU_1703	DVU_1705	Type I restriction-modification enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.	0.978
DVU_1703	DVU_1707	DVU_1703	DVU_1707	Type I restriction-modification enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Hypothetical protein; Identified by Glimmer2; putative.	0.753
DVU_1703	DVU_1708	DVU_1703	DVU_1708	Type I restriction-modification enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01XC0464.	0.863
DVU_1703	DVU_1710	DVU_1703	DVU_1710	Type I restriction-modification enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Conserved hypothetical protein; Identified by similarity to GP:21114103.	0.957
DVU_1703	hsdM	DVU_1703	DVU_1709	Type I restriction-modification enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497.	0.988
DVU_1705	DVU_1702	DVU_1705	DVU_1702	Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.	Conserved hypothetical protein; Identified by similarity to GP:21114108; match to protein family HMM PF01863.	0.885
DVU_1705	DVU_1703	DVU_1705	DVU_1703	Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.	Type I restriction-modification enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.978
DVU_1705	DVU_1707	DVU_1705	DVU_1707	Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.	Hypothetical protein; Identified by Glimmer2; putative.	0.788
DVU_1705	DVU_1708	DVU_1705	DVU_1708	Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.	Conserved hypothetical protein; Identified by similarity to OMNI:NTL01XC0464.	0.884
DVU_1705	DVU_1710	DVU_1705	DVU_1710	Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.	Conserved hypothetical protein; Identified by similarity to GP:21114103.	0.879
DVU_1705	DVU_2022	DVU_1705	DVU_2022	Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.	Conserved hypothetical protein; Identified by similarity to GP:28629295.	0.416
DVU_1705	hsdM	DVU_1705	DVU_1709	Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.	Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497.	0.997
DVU_1707	DVU_1703	DVU_1707	DVU_1703	Hypothetical protein; Identified by Glimmer2; putative.	Type I restriction-modification enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.	0.753
DVU_1707	DVU_1705	DVU_1707	DVU_1705	Hypothetical protein; Identified by Glimmer2; putative.	Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.	0.788

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