Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_1710Conserved hypothetical protein; Identified by similarity to GP:21114103. (192 aa)    
Predicted Functional Partners:
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497.
 
 
 0.998
DVU_1703
Type I restriction-modification enzyme, R subunit; Subunit R is required for both nuclease and ATPase activities, but not for modification.
 
  
 0.957
DVU_1708
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01XC0464.
  
    0.908
DVU_1707
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.907
DVU_1705
Type I restriction-modification enzyme, S subunit; Identified by match to protein family HMM PF01420.
 
     0.879
DVU_1702
Conserved hypothetical protein; Identified by similarity to GP:21114108; match to protein family HMM PF01863.
 
    0.848
polA
DNA polymerase I; Identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593.
   
 
 0.548
DVU_1706
Hypothetical protein; Identified by Glimmer2; putative.
       0.489
DVU_1294
Conserved hypothetical protein; Identified by similarity to OMNI:CT0704; match to protein family HMM PF01863.
 
    0.452
DVU_1704
Conserved hypothetical protein; Identified by similarity to OMNI:SAG0550.
       0.423
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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