Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1714Conserved hypothetical protein; Identified by similarity to GP:13186158. (697 aa)    
Predicted Functional Partners:
DVU_1715
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.912
DVU_1721
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.865
DVU_2604
Conserved hypothetical protein; Identified by similarity to GP:13186164.
 
    0.828
DVU_2598
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.809
DVU_1712
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.791
DVU_1713
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.774
DVU_1458
Chemotaxis protein CheZ, putative; Identified by similarity to SP:P07800.
  
     0.682
DVU_1724
Phage uncharacterized protein, putative.
 
    0.648
DVU_3073
Conserved domain protein; Identified by similarity to OMNI:HI1195.
  
    0.586
DVU_1725
Conserved hypothetical protein; Identified by similarity to GP:13346844.
  
    0.561
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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