Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1726Hypothetical protein; Identified by Glimmer2; putative. (82 aa)    
Predicted Functional Partners:
DVU_1727
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.830
DVU_1728
Conserved hypothetical protein; Identified by similarity to GP:16506030.
  
    0.790
DVU_1723
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.530
DVU_1724
Phage uncharacterized protein, putative.
  
    0.530
DVU_1720
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.523
DVU_1718
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.515
DVU_1721
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.514
DVU_1719
Conserved domain protein.
       0.489
DVU_1722
Hypothetical protein; Identified by Glimmer2; putative.
       0.489
DVU_1725
Conserved hypothetical protein; Identified by similarity to GP:13346844.
       0.489
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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