Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| DVU_1859 | DVU_1862 | DVU_1859 | DVU_1862 | Hypothetical protein; Identified by Glimmer2; putative. | GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. | 0.697 |
| DVU_1859 | DVU_1863 | DVU_1859 | DVU_1863 | Hypothetical protein; Identified by Glimmer2; putative. | Flagellar synthesis regulator FleN, putative; Identified by similarity to OMNI:NTL03PA01455. | 0.697 |
| DVU_1859 | cutE | DVU_1859 | DVU_1860 | Hypothetical protein; Identified by Glimmer2; putative. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.777 |
| DVU_1859 | prfB | DVU_1859 | DVU_1861 | Hypothetical protein; Identified by Glimmer2; putative. | Peptide chain release factor 2, programmed frameshift; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.697 |
| DVU_1862 | DVU_1859 | DVU_1862 | DVU_1859 | GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. | Hypothetical protein; Identified by Glimmer2; putative. | 0.697 |
| DVU_1862 | DVU_1863 | DVU_1862 | DVU_1863 | GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. | Flagellar synthesis regulator FleN, putative; Identified by similarity to OMNI:NTL03PA01455. | 0.785 |
| DVU_1862 | cutE | DVU_1862 | DVU_1860 | GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.734 |
| DVU_1862 | prfB | DVU_1862 | DVU_1861 | GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. | Peptide chain release factor 2, programmed frameshift; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.967 |
| DVU_1863 | DVU_1859 | DVU_1863 | DVU_1859 | Flagellar synthesis regulator FleN, putative; Identified by similarity to OMNI:NTL03PA01455. | Hypothetical protein; Identified by Glimmer2; putative. | 0.697 |
| DVU_1863 | DVU_1862 | DVU_1863 | DVU_1862 | Flagellar synthesis regulator FleN, putative; Identified by similarity to OMNI:NTL03PA01455. | GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254. | 0.785 |
| DVU_1863 | cutE | DVU_1863 | DVU_1860 | Flagellar synthesis regulator FleN, putative; Identified by similarity to OMNI:NTL03PA01455. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.720 |
| DVU_1863 | prfB | DVU_1863 | DVU_1861 | Flagellar synthesis regulator FleN, putative; Identified by similarity to OMNI:NTL03PA01455. | Peptide chain release factor 2, programmed frameshift; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.794 |
| bamA | bamD | DVU_2373 | DVU_1837 | Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Competence protein, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.983 |
| bamA | cutE | DVU_2373 | DVU_1860 | Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.676 |
| bamA | lspA | DVU_2373 | DVU_1928 | Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.614 |
| bamA | tolQ-1 | DVU_2373 | DVU_2388 | Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | tolQ protein; Identified by similarity to SP:P05828; match to protein family HMM PF01618. | 0.671 |
| bamA | tolQ-2 | DVU_2373 | DVU_3099 | Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | tolQ protein; Identified by similarity to SP:P05828; match to protein family HMM PF01618. | 0.744 |
| bamD | bamA | DVU_1837 | DVU_2373 | Competence protein, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Outer membrane protein, OMP85 family; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | 0.983 |
| bamD | cutE | DVU_1837 | DVU_1860 | Competence protein, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Apolipoprotein N-acyltransferase; Catalyzes the phospholipid dependent N-acylation of the N- terminal cysteine of apolipoprotein, the last step in lipoprotein maturation; Belongs to the CN hydrolase family. Apolipoprotein N- acyltransferase subfamily. | 0.704 |
| bamD | lspA | DVU_1837 | DVU_1928 | Competence protein, putative; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane. | Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family. | 0.552 |
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