STRINGSTRING
DVU_1863 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1863" - Site-determining protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1863Site-determining protein; Identified by similarity to OMNI-NTL03PA01455; Belongs to the ParA family (272 aa)    
Predicted Functional Partners:
DVU_1862
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (331 aa)
              0.886
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (371 aa)
              0.886
cutE
Apolipoprotein N-acyltransferase; Transfers the fatty acyl group on membrane lipoproteins (502 aa)
         
  0.842
DVU_1859
Uncharacterized protein; Identified by Glimmer2; putative (41 aa)
              0.770
DVU_3231
Flagellar biosynthesis protein FlhF, putative; Identified by similarity to SP-Q01960; match to protein family HMM PF00448 (365 aa)
 
 
  0.723
DVU_1864
DNA-binding protein HU, beta subunit, putative; Identified by similarity to SP-P08821; match to protein family HMM PF00216 (93 aa)
              0.723
DVU_1866
Uncharacterized protein; Identified by Glimmer2; putative (233 aa)
              0.626
DVU_1865
Uncharacterized protein; Identified by Glimmer2; putative (46 aa)
              0.618
fliM
Flagellar motor switch protein FliM; Identified by similarity to SP-P06974; match to protein family HMM PF01052; match to protein family HMM PF02154; match to protein family HMM TIGR01397 (326 aa)
 
     
  0.535
dapF
Diaminopimelate epimerase; Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan (282 aa)
              0.491
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (17%) [HD]