STRINGSTRING
DVU_1864 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1864" - DNA-binding protein HU, beta subunit, putative in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1864DNA-binding protein HU, beta subunit, putative; Identified by similarity to SP-P08821; match to protein family HMM PF00216 (93 aa)    
Predicted Functional Partners:
hup-4
DNA-binding protein HU; Identified by similarity to SP-P02341; similar to SP-P08821; similar to GP-14028719; match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family (95 aa)
   
 
  0.912
hupB
DNA-binding protein HU, beta subunit; Identified by similarity to SP-P02346; match to protein family HMM PF00216; Belongs to the bacterial histone-like protein family (95 aa)
   
     
  0.876
DVU_1865
Uncharacterized protein; Identified by Glimmer2; putative (46 aa)
              0.845
hup-1
Integration host factor subunit alpha; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control (95 aa)
   
 
0.841
DVU_1866
Uncharacterized protein; Identified by Glimmer2; putative (233 aa)
              0.763
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA (371 aa)
         
  0.732
DVU_2106
Sigma-54 dependent transcriptional regulator; Identified by match to protein family HMM PF00158; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM TIGR00229; match to protein family HMM TIGR01199 (458 aa)
           
  0.727
DVU_1863
Site-determining protein; Identified by similarity to OMNI-NTL03PA01455; Belongs to the ParA family (272 aa)
              0.723
DVU_1862
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254 (331 aa)
              0.722
cutE
Apolipoprotein N-acyltransferase; Transfers the fatty acyl group on membrane lipoproteins (502 aa)
              0.678
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (16%) [HD]