STRINGSTRING
DVU_1877 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1877" - Identified by match to protein family HMM PF01522 in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1877Identified by match to protein family HMM PF01522 (366 aa)    
Predicted Functional Partners:
DVU_0134
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (345 aa)
   
   
  0.621
DVU_1876
DnaJ protein, putative; Identified by similarity to SP-P08622; match to protein family HMM PF00226; match to protein family HMM PF01556 (316 aa)
   
        0.610
DVU_1875
DafA protein; Identified by similarity to SP-P77527 (105 aa)
 
          0.593
DVU_1012
Hemolysin-type calcium-binding repeat protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM TIGR01612 (3038 aa)
           
  0.499
clpB
Chaperone protein ClpB; Part of a stress-induced multi-chaperone system, it is involved in the recovery of the cell from heat-induced damage, in cooperation with DnaK, DnaJ and GrpE. Acts before DnaK, in the processing of protein aggregates. Protein binding stimulates the ATPase activity; ATP hydrolysis unfolds the denatured protein aggregates, which probably helps expose new hydrophobic binding sites on the surface of ClpB-bound aggregates, contributing to the solubilization and refolding of denatured protein aggregates by DnaK (By similarity); Belongs to the ClpA/ClpB family (865 aa)
         
  0.493
DVU_1879
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534 (366 aa)
 
     
  0.483
DVU_1060
Glycosyl transferase, group 1 family protein; Identified by match to protein family HMM PF00534 (367 aa)
     
  0.476
DVU_1673
annotation not available (280 aa)
 
        0.475
DVU_1435
Membrane protein, putative; Identified by similarity to OMNI-NTL03PA01784 (394 aa)
   
     
  0.474
DVU_1892
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (249 aa)
   
   
  0.471
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (19%) [HD]