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DVU_1887 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1887" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1887Uncharacterized protein; Identified by Glimmer2; putative (580 aa)    
Predicted Functional Partners:
DVU_1886
Uncharacterized protein; Identified by Glimmer2; putative (225 aa)
              0.844
gatB
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln) (476 aa)
              0.844
DVU_3173
Uncharacterized protein; Identified by Glimmer2; putative (58 aa)
   
          0.780
DVU_2511
Uncharacterized protein; Identified by Glimmer2; putative (95 aa)
   
          0.780
DVU_1375
Uncharacterized protein; Identified by Glimmer2; putative (76 aa)
   
          0.779
DVU_0136
Uncharacterized protein; Identified by Glimmer2; putative (72 aa)
 
          0.778
DVU_0691
annotation not available (319 aa)
   
          0.775
DVU_3281
Uncharacterized protein; Identified by Glimmer2; putative (166 aa)
   
          0.772
DVU_2427
Uncharacterized protein; Identified by Glimmer2; putative (213 aa)
   
          0.770
DVU_1620
Uncharacterized protein; Identified by Glimmer2; putative (80 aa)
   
          0.770
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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