Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_1891Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NS1759; match to protein family HMM PF05143. (253 aa)    
Predicted Functional Partners:
DVU_1892
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535.
    0.995
DVU_0292
Hypothetical protein; Identified by Glimmer2; putative.
     0.918
DVU_1036
Membrane protein, putative.
 
     0.761
deoD
Purine nucleoside phosphorylase; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
    
 0.684
DVU_1037
Mercuric reductase, putative; Identified by similarity to SP:P16171; match to protein family HMM PF00070; match to protein family HMM PF02852.
 
   
 0.624
DVU_2583
Lipoprotein, putative.
 
     0.579
DVU_1893
ATP-dependent protease, putative; Identified by match to protein family HMM PF05362; Belongs to the peptidase S16 family.
       0.542
DVU_3015
Conserved domain protein; Identified by similarity to OMNI:NT01MC1323.
  
     0.472
DVU_2053
Membrane protein, putative.
 
     0.453
DVU_0697
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; Identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM TIGR01479; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
   0.442
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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