Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Uncharacterized protein; Identified by similarity to OMNI-NTL01YP0471 (312 aa)
Predicted Functional Partners:
Peptidylprolyl isomerase; Identified by match to protein family HMM PF00639 (348 aa)
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination (251 aa)
TPR domain protein; Identified by match to protein family HMM PF00515 (1076 aa)
Transcription-repair-coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site (1160 aa)
Uncharacterized protein; Identified by similarity to OMNI-NTL02MA3501; match to protein family HMM PF03130 (642 aa)
TPR domain protein; Identified by match to protein family HMM PF00515 (237 aa)
TPR domain protein; Identified by match to protein family HMM PF00515 (285 aa)
Uncharacterized protein; Identified by Glimmer2; putative (201 aa)
Uncharacterized protein; Identified by Glimmer2; putative (872 aa)
Uncharacterized protein; Identified by Glimmer2; putative (337 aa)
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882 Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough