STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1925Lipase, GDSL family; Identified by similarity to SP:Q07792; match to protein family HMM PF00657. (213 aa)    
Predicted Functional Partners:
DVU_1926
Conserved hypothetical protein; Identified by similarity to GP:3482869.
  
    0.778
DVU_1498
Conserved hypothetical protein; Identified by similarity to GP:17484030.
  
 
 0.740
hypC
Hydrogenase assembly chaperone hypC/hupF; Identified by similarity to GP:15430693; match to protein family HMM PF01455; match to protein family HMM TIGR00074.
  
    0.727
hupD
Hydrogenase expression/formation protein HupD; Identified by similarity to SP:P31909; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140.
  
    0.705
DVU_1012
Hemolysin-type calcium-binding repeat protein; Identified by match to protein family HMM PF00092; match to protein family HMM PF00353; match to protein family HMM TIGR01612.
  
 
 0.594
DVU_1545
Hemolysin-type calcium-binding repeat/calx-beta domain protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF03160; match to protein family HMM TIGR01612.
  
 
 0.594
DVU_0725
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01MM0619; match to protein family HMM PF03190.
   
 
 0.581
DVU_2233
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA00369; match to protein family HMM PF00561.
 
  
 0.542
birA
birA bifunctional protein; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
  
  
 0.470
lspA
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
 
    0.437
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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