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DVU_1925 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1925" - Lipase, GDSL family in Desulfovibrio vulgaris Hildenborough
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query proteins and first shell of interactors
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second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
Cooccurence
Coexpression
Experiments
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Textmining
[Homology]
Score
DVU_1925Lipase, GDSL family; Identified by similarity to SP-Q07792; match to protein family HMM PF00657 (213 aa)    
Predicted Functional Partners:
DVU_1926
Uncharacterized protein; Identified by similarity to GP-3482869 (162 aa)
              0.850
hypC
Hydrogenase assembly chaperone hypC/hupF; Identified by similarity to GP-15430693; match to protein family HMM PF01455; match to protein family HMM TIGR00074 (83 aa)
              0.796
hupD
Hydrogenase expression/formation protein HupD; Identified by similarity to SP-P31909; match to protein family HMM PF01750; match to protein family HMM TIGR00072; match to protein family HMM TIGR00140 (165 aa)
              0.778
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
     
 
  0.596
DVU_2383
TonB dependent receptor domain protein; Identified by match to protein family HMM PF00593 (875 aa)
     
 
  0.545
DVU_1386
annotation not available (516 aa)
   
   
  0.528
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (1079 aa)
     
 
  0.519
ileS
Isoleucine--tRNA ligase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile) (938 aa)
              0.446
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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