STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1935Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528. (265 aa)    
Predicted Functional Partners:
phnC
Phosphonate ABC transporter, ATP-binding protein; Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphonates importer (TC 3.A.1.9.1) family.
 
 0.996
DVU_1937
Phosphonate ABC transporter, periplasmic phosphonate-binding protein, putative; Identified by similarity to SP:P16682.
 
 
 0.991
DVU_1934
Phosphonate ABC transporter, permease protein; Identified by similarity to SP:P16683; match to protein family HMM PF00528.
 
 
 
0.980
DVU_0120
ABC transporter, substrate-binding protein, putative; Identified by similarity to SP:P16682.
 
 
 0.962
DVU_0249
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01NSC0089.
 
  
 0.772
DVU_1933
Peptidase, PfpI family; Identified by match to protein family HMM PF01965; match to protein family HMM TIGR01382.
  
    0.548
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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