Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_1941HAD-superfamily hydrolase, subfamily IIA; Identified by match to protein family HMM PF00702; match to protein family HMM TIGR01460. (255 aa)    
Predicted Functional Partners:
DVU_1939
Anaerobic glycerol-3-phosphate dehydrogenase, B subunit, putative; Identified by similarity to SP:P13033.
  
    0.702
DVU_1940
Anaerobic glycerol-3-phosphate dehydrogenase, A subunit, putative; Identified by similarity to SP:P13032; match to protein family HMM PF01266.
  
  
 0.696
DVU_1686
ATPase, AAA family; Identified by match to protein family HMM PF00004.
 
      0.676
DVU_1938
Hypothetical protein; Identified by Glimmer2; putative.
       0.544
DVU_1651
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00387.
   
    0.538
DVU_1942
Identified by match to protein family HMM PF02645; match to protein family HMM PF02734; match to protein family HMM TIGR00762.
     
 0.499
DVU_1531
Methyltransferase, putative; Identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095.
 
    0.478
DVU_3079
Identified by match to protein family HMM PF00903.
   
 
 0.455
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
   0.449
purQ
Phosphoribosylformylglycinamidine synthase I.
    
 
 0.446
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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