STRINGSTRING
DVU_1985 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_1985" - annotation not available in Desulfovibrio vulgaris Hildenborough
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1985annotation not available (418 aa)    
Predicted Functional Partners:
DVU_2971
Glycosyl transferase, family 8; Identified by match to protein family HMM PF01501 (303 aa)
   
          0.669
DVU_3172
Uncharacterized protein; Identified by Glimmer2; putative (715 aa)
   
          0.659
DVU_3171
Cytochrome c3; Participates in sulfate respiration coupled with phosphorylation by transferring electrons from the enzyme dehydrogenase to ferredoxin (129 aa)
   
          0.634
DVU_1219
Uncharacterized protein; Identified by similarity to GP-6724082 (731 aa)
   
          0.611
DVU_0069
Uncharacterized protein; Identified by Glimmer2; putative (1467 aa)
 
          0.603
DVU_3186
Uncharacterized protein; Identified by Glimmer2; putative (273 aa)
   
     
  0.576
DVU_2810
Formate dehydrogenase formation protein FdhE, putative; Necessary for formate dehydrogenase activity (277 aa)
   
          0.573
DVU_1545
Hemolysin-type calcium-binding repeat/calx-beta domain protein; Identified by match to protein family HMM PF00353; match to protein family HMM PF03160; match to protein family HMM TIGR01612 (2414 aa)
   
          0.546
polA
DNA polymerase I; Identified by similarity to SP-P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF02739; match to protein family HMM TIGR00593 (1015 aa)
         
  0.530
DVU_2898
Uncharacterized protein; Identified by similarity to OMNI-NTL01MM1125 (333 aa)
   
          0.496
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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