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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_1995Anti-anti-sigma factor; Identified by match to protein family HMM PF01740; match to protein family HMM TIGR00377; Belongs to the anti-sigma-factor antagonist family. (109 aa)    
Predicted Functional Partners:
DVU_1451
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.968
DVU_1450
Anti-sigma factor, putative; Identified by similarity to SP:P70878; match to protein family HMM PF02518.
  
 
 0.952
fliN
Flagellar motor switch protein FliN; Identified by similarity to SP:P15070; match to protein family HMM PF01052.
  
   0.797
DVU_0517
Peptidase, M23/M37 family; Identified by similarity to SP:P75942; match to protein family HMM PF01551.
   
    0.764
flgH
Flagellar L-ring protein FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
    0.763
flgB
Flagellar basal-body rod protein FlgB; Structural component of flagellum, the bacterial motility apparatus. Part of the rod structure of flagellar basal body.
   
    0.762
DVU_1244
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS2960; match to protein family HMM PF02470.
  
   0.761
DVU_0610
Conserved hypothetical protein; Identified by similarity to OMNI:NTL03PA03213; match to protein family HMM PF02470.
  
   0.757
DVU_1245
ABC transporter, ATP-binding protein; Identified by similarity to SP:P45393; match to protein family HMM PF00005.
  
   0.754
DVU_1246
Membrane protein, putative; Identified by similarity to OMNI:NTL01AA00252; match to protein family HMM PF02405; match to protein family HMM TIGR00056.
  
   0.753
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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