DVU_1999 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

DVU_1999

Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740. (714 aa)

Predicted Functional Partners:

DVU_0070

0.642

DVU_3144

0.632

DVU_1998

0.628

acpP

0.543

DVU_2562

0.543

DVU_1547

0.479

DVU_1563

0.434

DVU_1458

0.409

Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
DVU_0070	DVU_1999	DVU_0070	DVU_1999	Identified by match to protein family HMM PF00149.	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.642
DVU_1458	DVU_1999	DVU_1458	DVU_1999	Chemotaxis protein CheZ, putative; Identified by similarity to SP:P07800.	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.409
DVU_1547	DVU_1999	DVU_1547	DVU_1999	Sensory box protein; Identified by match to protein family HMM PF00785; match to protein family HMM TIGR00229.	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.479
DVU_1563	DVU_1999	DVU_1563	DVU_1999	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.434
DVU_1998	DVU_1999	DVU_1998	DVU_1999	Hypothetical protein; Identified by Glimmer2; putative.	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.628
DVU_1999	DVU_0070	DVU_1999	DVU_0070	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	Identified by match to protein family HMM PF00149.	0.642
DVU_1999	DVU_1458	DVU_1999	DVU_1458	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	Chemotaxis protein CheZ, putative; Identified by similarity to SP:P07800.	0.409
DVU_1999	DVU_1547	DVU_1999	DVU_1547	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	Sensory box protein; Identified by match to protein family HMM PF00785; match to protein family HMM TIGR00229.	0.479
DVU_1999	DVU_1563	DVU_1999	DVU_1563	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.434
DVU_1999	DVU_1998	DVU_1999	DVU_1998	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	Hypothetical protein; Identified by Glimmer2; putative.	0.628
DVU_1999	DVU_2562	DVU_1999	DVU_2562	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	Acyl carrier protein, putative; Identified by similarity to SP:P20804.	0.543
DVU_1999	DVU_3144	DVU_1999	DVU_3144	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	Cytochrome c family protein.	0.632
DVU_1999	acpP	DVU_1999	DVU_1205	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.543
DVU_2562	DVU_1999	DVU_2562	DVU_1999	Acyl carrier protein, putative; Identified by similarity to SP:P20804.	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.543
DVU_2562	DVU_3144	DVU_2562	DVU_3144	Acyl carrier protein, putative; Identified by similarity to SP:P20804.	Cytochrome c family protein.	0.431
DVU_2562	acpP	DVU_2562	DVU_1205	Acyl carrier protein, putative; Identified by similarity to SP:P20804.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.940
DVU_3144	DVU_1999	DVU_3144	DVU_1999	Cytochrome c family protein.	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.632
DVU_3144	DVU_2562	DVU_3144	DVU_2562	Cytochrome c family protein.	Acyl carrier protein, putative; Identified by similarity to SP:P20804.	0.431
DVU_3144	acpP	DVU_3144	DVU_1205	Cytochrome c family protein.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.431
acpP	DVU_1999	DVU_1205	DVU_1999	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Identified by similarity to OMNI:VC2031; match to protein family HMM PF00916; match to protein family HMM PF01740.	0.543

page 1 of 2

Server load: low (10%) [HD]

Permalink

Network

Neighborhood

Experiments

Co-occurrence

Databases

Co-expression

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About