STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2012Hypothetical protein; Identified by Glimmer2; putative. (61 aa)    
Predicted Functional Partners:
DVU_2484
Identified by match to protein family HMM PF00034.
  
 
 0.917
DVU_3107
Identified by match to protein family HMM PF00034.
  
 
 0.872
DVU_2037
cobS protein, putative; Identified by similarity to SP:P29933.
  
  
 0.733
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O; Belongs to the HCP family.
     
 0.573
DVU_1081
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
  
  
 0.526
DVU_2493
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
  
  
 0.526
DVU_0854
NirD protein, putative; Identified by similarity to SP:Q52522.
  
  
 0.503
DVU_3167
Heme biosynthesis protein, putative; Identified by similarity to SP:Q52522.
  
  
 0.503
DVU_2011
ISD1, transposase OrfA; Identified by similarity to GP:2645860; match to protein family HMM PF01527.
       0.463
DVU_2014
Identified by match to protein family HMM PF00753; In the N-terminal section; belongs to the zinc metallo- hydrolase group 3 family.
  
  
 0.463
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.