STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2012Hypothetical protein; Identified by Glimmer2; putative. (61 aa)    
Predicted Functional Partners:
DVU_2484
Identified by match to protein family HMM PF00034.
  
 
 0.914
DVU_3107
Identified by match to protein family HMM PF00034.
  
 
 0.873
DVU_2037
cobS protein, putative; Identified by similarity to SP:P29933.
  
  
 0.745
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O; Belongs to the HCP family.
     
 0.574
DVU_1081
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
  
  
 0.500
DVU_2493
Iron-sulfur cluster-binding protein; Identified by match to protein family HMM PF00037.
  
  
 0.500
DVU_0854
NirD protein, putative; Identified by similarity to SP:Q52522.
  
  
 0.491
DVU_3167
Heme biosynthesis protein, putative; Identified by similarity to SP:Q52522.
  
  
 0.491
DVU_1814
Cytochrome c oxidase, subunit III, putative; Identified by similarity to SP:P50677; match to protein family HMM PF00510.
  
  
 0.467
DVU_2011
ISD1, transposase OrfA; Identified by similarity to GP:2645860; match to protein family HMM PF01527.
       0.463
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.