STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2014Identified by match to protein family HMM PF00753; In the N-terminal section; belongs to the zinc metallo- hydrolase group 3 family. (391 aa)    
Predicted Functional Partners:
DVU_0665
Nitrogen fixation protein nifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins; Belongs to the NifU family.
  
  
 0.753
hcp
Hybrid cluster protein; Catalyzes the reduction of hydroxylamine to form NH(3) and H(2)O; Belongs to the HCP family.
     
 0.611
DVU_2015
Hypothetical protein; Identified by Glimmer2; putative.
       0.549
DVU_0170
Methyl-accepting chemotaxis protein; Identified by match to protein family HMM PF00015; match to protein family HMM PF01814.
  
  
 0.548
dcrH
Methyl-accepting chemotaxis protein DcrH; Identified by similarity to GP:887858; match to protein family HMM PF00015; match to protein family HMM PF00672; match to protein family HMM PF01814.
  
  
 0.542
DVU_3106
GGDEF domain protein; Identified by match to protein family HMM PF00990; match to protein family HMM TIGR00254.
  
  
 0.515
DVU_1597
Sulfite reductase, assimilatory-type; This enzyme catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L-cysteine from sulfate.
  
  
 0.509
DVU_3049
Hemerythrin family protein.
  
  
 0.492
DVU_3312
Conserved hypothetical protein; Identified by similarity to SP:O28974.
   
  
 0.483
DVU_2012
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.463
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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