STRINGSTRING
DVU_2017 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2017" - ISDvu5, transposase in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2017ISDvu5, transposase; Identified by similarity to GP-7339832; match to protein family HMM PF01610 (413 aa)    
Predicted Functional Partners:
DVU_2016
GGDEF domain protein; Identified by match to protein family HMM PF00990 (293 aa)
              0.703
DVU_2024
Uncharacterized protein; Identified by similarity to OMNI-NMB2085 (354 aa)
 
          0.548
DVU_2021
Uncharacterized protein; Identified by Glimmer2; putative (155 aa)
 
          0.535
DVU_2019
Uncharacterized protein; Identified by similarity to OMNI-NTL02MA2298 (689 aa)
 
          0.507
DVU_2022
Uncharacterized protein; Identified by similarity to GP-28629295 (1158 aa)
 
          0.504
DVU_2025
Uncharacterized protein; Identified by similarity to GP-19882263; match to protein family HMM TIGR01612 (1183 aa)
 
          0.496
DVU_2020
Uncharacterized protein; Identified by similarity to GP-20095133 (832 aa)
 
          0.496
DVU_2023
Uncharacterized protein; Identified by Glimmer2; putative (179 aa)
              0.431
DVU_2026
Uncharacterized protein; Identified by similarity to GP-19916320 (196 aa)
              0.427
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (23%) [HD]