STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2017ISDvu5, transposase; Identified by similarity to GP:7339832; match to protein family HMM PF01610. (413 aa)    
Predicted Functional Partners:
DVU_2016
GGDEF domain protein; Identified by match to protein family HMM PF00990.
 
     0.681
DVU_1547
Sensory box protein; Identified by match to protein family HMM PF00785; match to protein family HMM TIGR00229.
  
     0.556
DVU_2020
Conserved hypothetical protein; Identified by similarity to GP:20095133.
     
 0.436
DVU_2019
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA2298.
       0.424
DVU_2021
Hypothetical protein; Identified by Glimmer2; putative.
       0.412
DVU_2022
Conserved hypothetical protein; Identified by similarity to GP:28629295.
       0.412
DVU_2023
Hypothetical protein; Identified by Glimmer2; putative.
       0.412
DVU_2024
Conserved hypothetical protein; Identified by similarity to OMNI:NMB2085.
       0.412
DVU_2025
Conserved hypothetical protein; Identified by similarity to GP:19882263; match to protein family HMM TIGR01612.
       0.412
DVU_2948
Bacterial flagellin N-terminal domain protein; Identified by match to protein family HMM PF00669.
  
     0.410
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (12%) [HD]