Automated, unsupervised textmining - searching for proteins that are frequently mentioned together.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Uncharacterized protein; Identified by similarity to GP-20095133 (832 aa)
Predicted Functional Partners:
Uncharacterized protein; Identified by similarity to GP-28629295 (1158 aa)
Uncharacterized protein; Identified by similarity to GP-19882263; match to protein family HMM TIGR01612 (1183 aa)
Uncharacterized protein; Identified by similarity to GP-19916320 (196 aa)
Uncharacterized protein; Identified by similarity to OMNI-NMB2085 (354 aa)
Uncharacterized protein; Identified by similarity to OMNI-NTL02MA2298 (689 aa)
Uncharacterized protein; Identified by Glimmer2; putative (179 aa)
Uncharacterized protein; Identified by Glimmer2; putative (155 aa)
Uncharacterized protein; Identified by Glimmer2; putative (104 aa)
Succinate--CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit (709 aa)
ISDvu5, transposase; Identified by similarity to GP-7339832; match to protein family HMM PF01610 (413 aa)
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882 Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough