STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2020Conserved hypothetical protein; Identified by similarity to GP:20095133. (832 aa)    
Predicted Functional Partners:
DVU_2019
Conserved hypothetical protein; Identified by similarity to OMNI:NTL02MA2298.
 
  
 0.995
DVU_2022
Conserved hypothetical protein; Identified by similarity to GP:28629295.
 
  
 0.995
DVU_2025
Conserved hypothetical protein; Identified by similarity to GP:19882263; match to protein family HMM TIGR01612.
 
  
 0.995
DVU_2026
Conserved hypothetical protein; Identified by similarity to GP:19916320.
 
    0.979
DVU_2024
Conserved hypothetical protein; Identified by similarity to OMNI:NMB2085.
 
  
 0.966
DVU_2023
Hypothetical protein; Identified by Glimmer2; putative.
       0.800
DVU_2021
Hypothetical protein; Identified by Glimmer2; putative.
       0.776
DVU_2149
Conserved hypothetical protein; Identified by similarity to GP:21666416; match to protein family HMM PF05670.
  
  
 0.770
hsdM
Type I restriction-modification system, M subunit; Identified by match to protein family HMM PF02384; match to protein family HMM PF02506; match to protein family HMM TIGR00497.
   
    0.575
DVU_2027
Hypothetical protein; Identified by Glimmer2; putative.
       0.499
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.