STRINGSTRING
DVU_2020 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2020" - Uncharacterized protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2020Uncharacterized protein; Identified by similarity to GP-20095133 (832 aa)    
Predicted Functional Partners:
DVU_2022
Uncharacterized protein; Identified by similarity to GP-28629295 (1158 aa)
 
          0.981
DVU_2025
Uncharacterized protein; Identified by similarity to GP-19882263; match to protein family HMM TIGR01612 (1183 aa)
 
        0.968
DVU_2026
Uncharacterized protein; Identified by similarity to GP-19916320 (196 aa)
 
          0.966
DVU_2024
Uncharacterized protein; Identified by similarity to OMNI-NMB2085 (354 aa)
 
          0.964
DVU_2019
Uncharacterized protein; Identified by similarity to OMNI-NTL02MA2298 (689 aa)
 
          0.962
DVU_2023
Uncharacterized protein; Identified by Glimmer2; putative (179 aa)
              0.857
DVU_2021
Uncharacterized protein; Identified by Glimmer2; putative (155 aa)
              0.845
DVU_2027
Uncharacterized protein; Identified by Glimmer2; putative (104 aa)
              0.538
sucCD
Succinate--CoA ligase [ADP-forming] subunit alpha; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit (709 aa)
   
        0.511
DVU_2017
ISDvu5, transposase; Identified by similarity to GP-7339832; match to protein family HMM PF01610 (413 aa)
 
          0.496
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
Server load: low (11%) [HD]