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DVU_2042 protein (Desulfovibrio vulgaris Hildenborough) - STRING interaction network
"DVU_2042" - Fic family protein in Desulfovibrio vulgaris Hildenborough
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2042Fic family protein; Identified by match to protein family HMM PF02661 (264 aa)    
Predicted Functional Partners:
DVU_2041
Uncharacterized protein; Identified by similarity to GP-20095150 (331 aa)
 
          0.838
DVU_2043
Uncharacterized protein; Identified by similarity to GP-20095140 (533 aa)
 
          0.681
DVU_2040
Uncharacterized protein; Identified by Glimmer2; putative (95 aa)
              0.668
DVU_2039
Uncharacterized protein; Identified by Glimmer2; putative (91 aa)
              0.661
DVU_2038
Uncharacterized protein; Identified by Glimmer2; putative (98 aa)
              0.503
DVU_2035
Plasmid stabilization system family protein; Identified by match to protein family HMM PF05016 (95 aa)
 
          0.478
DVU_2045
Uncharacterized protein; Identified by Glimmer2; putative (60 aa)
              0.431
DVU_2044
Uncharacterized protein; Identified by Glimmer2; putative (41 aa)
              0.431
DVU_2022
Uncharacterized protein; Identified by similarity to GP-28629295 (1158 aa)
              0.426
DVU_2037
CobS protein, putative; Identified by similarity to SP-P29933 (324 aa)
              0.411
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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