DVU_2086 protein (Desulfovibrio vulgaris Hildenborough)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

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gene co-occurrence

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Your Current Organism:

Desulfovibrio vulgaris Hildenborough

NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
DVU_0567	DVU_0721	Identified by match to protein family HMM PF03741.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.428
DVU_0567	DVU_0743	Identified by match to protein family HMM PF03741.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.428
DVU_0567	DVU_1760	Identified by match to protein family HMM PF03741.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.428
DVU_0567	DVU_2086	Identified by match to protein family HMM PF03741.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.448
DVU_0567	DVU_2378	Identified by match to protein family HMM PF03741.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.425
DVU_0721	DVU_0567	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Identified by match to protein family HMM PF03741.	0.428
DVU_0721	DVU_0743	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.534
DVU_0721	DVU_1760	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.702
DVU_0721	DVU_2086	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.689
DVU_0721	DVU_2378	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.707
DVU_0743	DVU_0567	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Identified by match to protein family HMM PF03741.	0.428
DVU_0743	DVU_0721	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.534
DVU_0743	DVU_1760	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	0.702
DVU_0743	DVU_2086	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.689
DVU_0743	DVU_2378	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	Transcriptional regulator, AraC family; Identified by match to protein family HMM PF00165.	0.707
DVU_1456	DVU_2086	Identified by match to protein family HMM PF01784; match to protein family HMM TIGR00486; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.483
DVU_1760	DVU_0567	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Identified by match to protein family HMM PF03741.	0.428
DVU_1760	DVU_0721	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.702
DVU_1760	DVU_0743	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Sensory box histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF00989; match to protein family HMM PF02518; match to protein family HMM TIGR00229.	0.702
DVU_1760	DVU_2086	Transcriptional regulator, TetR family; Identified by match to protein family HMM PF00440.	Transcriptional regulator, GntR family; Identified by match to protein family HMM PF00392.	0.729

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