Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
DVU_2099Carbon monoxide dehydrogenase accessory protein CooC, putative; Identified by similarity to SP:P31897; match to protein family HMM PF00991. (293 aa)    
Predicted Functional Partners:
cooS
Carbon monoxide dehydrogenase; Identified by similarity to SP:P31896.
 
   
 0.949
DVU_2097
Transcriptional regulator, putative; Identified by similarity to SP:P03019; match to protein family HMM PF00027.
 
     0.719
DVU_0366
Identified by match to protein family HMM PF01812; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
     
 0.699
DVU_0908
Iron-sulfur cluster-binding protein, putative.
 
   
 0.645
DVU_0365
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01RS1629; match to protein family HMM PF02578.
   
  
 0.596
dnaB
Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
  
   
 0.502
DVU_1585
Vitamin B12-dependent methionine synthase family protein; Identified by similarity to SP:P37586; match to protein family HMM PF00809; match to protein family HMM PF02310; match to protein family HMM PF02574; match to protein family HMM PF02607.
     
 0.482
DVU_1919
Hydrogenase expression/formation protein, putative; Identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072.
     
 0.436
DVU_1658
Transaldolase, putative; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the transaldolase family. Type 3B subfamily.
      
 0.432
lys1
Saccharopine dehydrogenase; Identified by match to protein family HMM PF03435.
      
 0.431
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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