Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DVU_2102Outer membrane protein, OMP85 family; Identified by match to protein family HMM PF01103. (776 aa)    
Predicted Functional Partners:
DVU_2101
Conserved hypothetical protein; Identified by similarity to OMNI:CC1604; match to protein family HMM PF04357.
 
 
 0.997
DVU_2527
Transcriptional regulator, putative; Identified by similarity to SP:P55323.
  
     0.697
DVU_3080
Transcriptional regulator, putative; Identified by similarity to SP:P55323.
  
     0.692
DVU_3084
Transcriptional regulator, putative; Identified by similarity to SP:Q04152.
  
     0.660
pal
Peptidoglycan-associated lipoprotein, putative; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
   
 0.481
DVU_2100
Identified by match to protein family HMM PF00582.
       0.432
DVU_2103
Iron-sulfur cluster-binding/ATPase domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF00991.
       0.414
DVU_2104
Iron-sulfur cluster-binding/ATPase domain protein; Identified by match to protein family HMM PF00037; match to protein family HMM PF00991.
       0.414
DVU_0160
Carbohydrate isomerase, KpsF/GutQ family; Identified by match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; Belongs to the SIS family. GutQ/KpsF subfamily.
   
    0.403
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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