STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2123Membrane protein, putative; Identified by similarity to OMNI:NTL01RS0651. (321 aa)    
Predicted Functional Partners:
DVU_2124
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00146.
 
  
 0.993
DVU_2121
Response regulator; Identified by match to protein family HMM PF00072.
 
  
 0.985
DVU_2122
Type II/IV secretion system protein; Identified by similarity to GP:10334985; match to protein family HMM PF00437.
 
  
 0.985
DVU_2118
Conserved hypothetical protein; Identified by similarity to OMNI:CT0429.
 
  
 0.980
DVU_2117
Membrane protein, putative.
 
  
 0.950
DVU_2119
Type II/III secretion system protein; Identified by match to protein family HMM PF00263; Belongs to the bacterial secretin family.
 
  
 0.940
DVU_3344
Hypothetical protein; Identified by Glimmer2; putative.
 
  
 0.902
DVU_2116
Pilin, putative; Identified by similarity to OMNI:NTL01RSA1092; match to protein family HMM PF04964.
 
  
 0.874
DVU_2128
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.771
DVU_2126
Hypothetical protein; Identified by Glimmer2; putative.
  
  
 0.734
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.