Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_2124Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00146. (284 aa)    
Predicted Functional Partners:
DVU_2123
Membrane protein, putative; Identified by similarity to OMNI:NTL01RS0651.
 
 
 0.999
DVU_2118
Conserved hypothetical protein; Identified by similarity to OMNI:CT0429.
 
 
 0.997
DVU_2121
Response regulator; Identified by match to protein family HMM PF00072.
 
 
 0.996
DVU_2122
Type II/IV secretion system protein; Identified by similarity to GP:10334985; match to protein family HMM PF00437.
 
 
 0.996
DVU_2119
Type II/III secretion system protein; Identified by match to protein family HMM PF00263; Belongs to the bacterial secretin family.
 
 
 0.994
DVU_3344
Hypothetical protein; Identified by Glimmer2; putative.
 
    0.887
DVU_2117
Membrane protein, putative.
 
    0.850
DVU_2116
Pilin, putative; Identified by similarity to OMNI:NTL01RSA1092; match to protein family HMM PF04964.
 
  
 0.848
DVU_2125
TPR domain protein; Identified by match to protein family HMM PF00515.
 
  
 0.795
DVU_2127
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
 
    0.708
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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