STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DVU_2126Hypothetical protein; Identified by Glimmer2; putative. (129 aa)    
Predicted Functional Partners:
DVU_2127
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092.
  
    0.822
DVU_2128
Hypothetical protein; Identified by Glimmer2; putative.
       0.735
DVU_2123
Membrane protein, putative; Identified by similarity to OMNI:NTL01RS0651.
  
  
 0.734
DVU_2118
Conserved hypothetical protein; Identified by similarity to OMNI:CT0429.
  
  
 0.714
DVU_2121
Response regulator; Identified by match to protein family HMM PF00072.
  
  
 0.706
DVU_2124
Conserved hypothetical protein; Identified by similarity to OMNI:NTL01SM00146.
  
    0.688
DVU_2129
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229.
  
    0.627
DVU_2122
Type II/IV secretion system protein; Identified by similarity to GP:10334985; match to protein family HMM PF00437.
  
  
 0.600
DVU_2116
Pilin, putative; Identified by similarity to OMNI:NTL01RSA1092; match to protein family HMM PF04964.
  
  
 0.555
DVU_2125
TPR domain protein; Identified by match to protein family HMM PF00515.
  
    0.479
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.