Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
STRING allows inspection of the interaction evidence for any given network. Choose any of the viewers above (disabled if not applicable in your network).
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Von Willebrand factor type A domain protein; Identified by match to protein family HMM PF00092 (420 aa)
Predicted Functional Partners:
Uncharacterized protein; Identified by Glimmer2; putative (164 aa)
Uncharacterized protein; Identified by Glimmer2; putative (129 aa)
Uncharacterized protein; Identified by Glimmer2; putative (343 aa)
Glycosyl transferase, group 2 family protein; Identified by match to protein family HMM PF00535 (677 aa)
Type II/III secretion system protein; Identified by match to protein family HMM PF00263; Belongs to the GSP D family (484 aa)
Uncharacterized protein; Identified by similarity to OMNI-NTL01SM00146 (284 aa)
Sensory box histidine kinase/response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF00512; match to protein family HMM PF00785; match to protein family HMM PF02518; match to protein family HMM TIGR00229 (823 aa)
annotation not available (188 aa)
Uncharacterized protein; Identified by similarity to OMNI-CT0429 (272 aa)
Membrane protein, putative; Identified by similarity to OMNI-NTL01RS0651 (321 aa)
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882 Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris Hildenborough, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough