Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DVU_2153Tail fiber protein, putative. (1346 aa)    
Predicted Functional Partners:
DVU_2157
Tail tape meausure protein, putative.
 
   0.960
DVU_2154
Tail assembly protein, putative; Identified by match to protein family HMM PF00877.
 
    0.953
DVU_1490
Tail tape measure protein, putative.
 
 
 0.921
DVU_1488
Minor tail protein, putative.
  
   0.858
DVU_1487
Conserved domain protein.
  
    0.849
DVU_1493
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.846
DVU_1495
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.846
DVU_1496
Hypothetical protein; Identified by Glimmer2; putative.
   
    0.846
DVU_2155
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.840
DVU_2711
Major head subunit, putative; Identified by similarity to SP:Q9T1W1.
 
  
 0.795
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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