Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DVU_2154Tail assembly protein, putative; Identified by match to protein family HMM PF00877. (141 aa)    
Predicted Functional Partners:
DVU_2153
Tail fiber protein, putative.
 
    0.953
DVU_2155
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.825
DVU_2152
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.791
DVU_2151
Conserved hypothetical protein; Identified by similarity to SP:P54342.
  
    0.790
DVU_2157
Tail tape meausure protein, putative.
 
 
 0.780
DVU_1486
Tail fiber protein, truncation.
 
    0.597
DVU_2156
Hypothetical protein; Identified by Glimmer2; putative.
  
    0.592
DVU_3374
Permease, putative; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
   
 
 0.574
DVU_2713
Conserved hypothetical protein.
 
    0.556
DVU_1490
Tail tape measure protein, putative.
 
 
 0.554
Your Current Organism:
Desulfovibrio vulgaris Hildenborough
NCBI taxonomy Id: 882
Other names: D. vulgaris str. Hildenborough, Desulfovibrio vulgaris (STRAIN HILDENBOROUGH), Desulfovibrio vulgaris ATCC 29579, Desulfovibrio vulgaris str. Hildenborough, Desulfovibrio vulgaris subsp. vulgaris (strain Hildenborough), Desulfovibrio vulgaris subsp. vulgaris ATCC 29579, Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough
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